../../tmp/servers/virsirnadb/1483023428
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1276 | 1 | ggacaacttcactatgaaa | 19 | |
| AF177911.1 | Coxsackievirus A16 polyprotein gene, complete cds | 2377 | ................... | 2395 | 100 |
| AF177911.1 | Coxsackievirus A16 polyprotein gene, complete cds | 5460 | _____...........___ | 5470 | 57 |
| AY790926.1 | Human coxsackievirus A16 strain shzh00-1, complete genome | 2377 | ................... | 2395 | 100 |
| AY790926.1 | Human coxsackievirus A16 strain shzh00-1, complete genome | 5460 | _____...........___ | 5470 | 57 |
| EU262658.1 | Human coxsackievirus A16 strain shzh05-1, complete genome | 2377 | ................... | 2395 | 100 |
| FJ198212.1 | Human coxsackievirus A16 strain GZ08, complete genome | 2377 | ................... | 2395 | 100 |
| GQ279371.1 | Human coxsackievirus A16 strain SZ/HK08-7, complete genome | 2377 | ...t............... | 2395 | 94 |
| HQ269389.1 | Human coxsackievirus A16 isolate XM-CA16-3560, complete genome | 2378 | ...t............... | 2396 | 94 |
| EU812514.1 | Human coxsackievirus A16 strain FY18 from China, complete genome | 2383 | .........t..c...... | 2401 | 89 |
| EU812514.1 | Human coxsackievirus A16 strain FY18 from China, complete genome | 5462 | _.g.c...........___ | 5476 | 68 |
| GQ279368.1 | Human coxsackievirus A16 strain SZ/HK08-3, complete genome | 2377 | .........t..c...... | 2395 | 89 |
| HQ423141.1 | Human coxsackievirus A16 strain KMM/08, complete genome | 2377 | .........t..c...... | 2395 | 89 |
| EU703812.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete | 2376 | __.g............... | 2392 | 84 |
| EU703813.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete | 2376 | __.g............... | 2392 | 84 |
| EU703814.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete | 2376 | __.g............... | 2392 | 84 |
| EU812515.1 | Human enterovirus 71 strain FY23 from China, complete genome | 2379 | __.g............... | 2395 | 84 |
| EU864507.1 | Human enterovirus 71 isolate EV71/Zhejiang08, complete genome | 2377 | __.g............... | 2393 | 84 |
| FJ158600.1 | Human enterovirus 71 isolate DTID/ZJU-62, complete genome | 2376 | __.g............... | 2392 | 84 |
| FJ158601.1 | Human enterovirus 71 isolate DTID/ZJU-74, complete genome | 2376 | __.g............... | 2392 | 84 |
| FJ194965.1 | Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome | 2376 | __.g............... | 2392 | 84 |
| FJ360546.1 | Human enterovirus 71 isolate GZ-08-03, complete genome | 2375 | __.g............... | 2391 | 84 |
| FJ439769.1 | Human enterovirus 71 strain Fuyang-0805, complete genome | 2376 | __.g............... | 2392 | 84 |
| FJ606448.1 | Human enterovirus 71 strain BJ08-Z011-4, complete genome | 2376 | __.g............... | 2392 | 84 |
| FJ606449.1 | Human enterovirus 71 strain BJ08-Z020-1, complete genome | 2376 | __.g............... | 2392 | 84 |
| FJ606450.1 | Human enterovirus 71 strain BJ08-Z025-5, complete genome | 2376 | __.g............... | 2392 | 84 |
| FJ713137.1 | Human enterovirus 71 strain Shanghai 036-2009, complete genome | 2378 | __.g............... | 2394 | 84 |
| FJ828519.1 | Human enterovirus 71 isolate BJ08, complete genome | 2355 | __.g............... | 2371 | 84 |
| FJ607334.1 | Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g | 2375 | __.g............... | 2391 | 84 |
| FJ607335.1 | Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g | 2375 | __.g............... | 2391 | 84 |
| FJ607337.1 | Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co | 2375 | __.g............... | 2391 | 84 |
| FJ607338.1 | Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c | 2375 | __.g............... | 2391 | 84 |
| GQ892830.1 | Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome | 2376 | __.g............... | 2392 | 84 |
| GQ994988.1 | Human enterovirus 71 strain Anhui1-09-China, complete genome | 2376 | __.g............... | 2392 | 84 |
| GU366191.1 | Human enterovirus 71 strain Henan10-08-China, complete genome | 2376 | __.g............... | 2392 | 84 |
| GU396280.1 | Human enterovirus 71 isolate EV71/Lanzhou01, complete genome | 2376 | __.g............... | 2392 | 84 |
| GU459070.1 | Human enterovirus 71 isolate FY23-K12, complete genome | 2379 | __.g............... | 2395 | 84 |
| GU459071.1 | Human enterovirus 71 isolate FY23-K14, complete genome | 2376 | __.g............... | 2392 | 84 |
| HM003207.1 | Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome | 2376 | __.g............... | 2392 | 84 |
| GQ279370.1 | Human enterovirus 71 strain SZ/HK08-6, complete genome | 2376 | __.g............... | 2392 | 84 |
| HM002484.1 | Human enterovirus 71 strain BJ67, complete genome | 2376 | __.g............... | 2392 | 84 |
| HM002485.1 | Human enterovirus 71 strain BJ97, complete genome | 2376 | __.g............... | 2392 | 84 |
| HM002486.1 | Human enterovirus 71 strain BJ110, complete genome | 2377 | __.g............... | 2393 | 84 |
| HM002487.1 | Human enterovirus 71 strain BJ303, complete genome | 2377 | __.g............... | 2393 | 84 |
| HM002488.1 | Human enterovirus 71 strain BJ366, complete genome | 2376 | __.g............... | 2392 | 84 |
| HM002489.1 | Human enterovirus 71 strain BJ398, complete genome | 2377 | __.g............... | 2393 | 84 |
| HM053669.1 | Human enterovirus 71 strain BJ293, complete genome | 2376 | __.g............... | 2392 | 84 |
| HM053671.1 | Human enterovirus 71 strain BJ462, complete genome | 2376 | __.g............... | 2392 | 84 |
| HQ407557.1 | Human enterovirus 71 strain LN009, complete genome | 2376 | __.g............... | 2392 | 84 |
| HQ426649.1 | Human enterovirus 71 strain 2010FJLY008, complete genome | 2374 | __.g............... | 2390 | 84 |
| HQ325852.1 | Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome | 2377 | __.g............... | 2393 | 84 |
| HQ891923.1 | Human enterovirus 71 strain Shanghai 27-2009, complete genome | 2377 | __.g............... | 2393 | 84 |
| HQ891924.1 | Human enterovirus 71 strain Shanghai 28-2009, complete genome | 2377 | __.g............... | 2393 | 84 |
| HQ891925.1 | Human enterovirus 71 strain Shanghai 36-2009, complete genome | 2378 | __.g............... | 2394 | 84 |
| HQ891926.1 | Human enterovirus 71 strain Shanghai 51-2009, complete genome | 2378 | __.g............... | 2394 | 84 |
| HQ891927.1 | Human enterovirus 71 strain Shanghai 64-2009, complete genome | 2377 | __.g............... | 2393 | 84 |
| HQ891928.1 | Human enterovirus 71 strain Shanghai 117-2009, complete genome | 2377 | __.g............... | 2393 | 84 |
| HQ891929.1 | Human enterovirus 71 strain Shanghai 118-2009, complete genome | 2377 | __.g............... | 2393 | 84 |
| HQ400942.1 | Human enterovirus 71 HZ08/Hangzhou/2008, complete genome | 2376 | __.g............... | 2392 | 84 |
| HQ456306.1 | Human enterovirus A strain GZ2010-134, complete genome | 2376 | __.g............... | 2392 | 84 |
| HQ456307.1 | Human enterovirus A strain GZ2010-120, complete genome | 2376 | __.g............... | 2392 | 84 |
| HQ456309.1 | Human enterovirus A strain GZ08-831, complete genome | 2376 | __.g............... | 2392 | 84 |
| HQ456310.1 | Human enterovirus A strain GZ08-530, complete genome | 2376 | __.g............... | 2392 | 84 |
| HQ456311.1 | Human enterovirus A strain GZ08-522, complete genome | 2376 | __.g............... | 2392 | 84 |
| HQ456312.1 | Human enterovirus A strain GZ08-520, complete genome | 2376 | __.g............... | 2392 | 84 |
| HQ611148.1 | Human enterovirus 71 strain AH08/06, complete genome | 2376 | __.g............... | 2392 | 84 |
| JN001860.1 | Human enterovirus 71 strain NB/2010/01, complete genome | 2377 | __.g............... | 2393 | 84 |
| AF119796.3 | Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds | 2375 | .a.g.............._ | 2392 | 84 |
| AF119796.3 | Enterovirus 71 strain TW/2086/98 polyprotein gene, complete cds | 5163 | ....ct.........c.._ | 5146 | 78 |
| EF373576.1 | Human enterovirus 71 strain E2004104-TW-CDC polyprotein gene, complet | 2374 | .a.a.............._ | 2391 | 84 |
| DQ133458.1 | Human enterovirus 71 strain 984 polyprotein gene, complete cds | 2376 | __.g.............._ | 2391 | 78 |
| DQ133459.1 | Human enterovirus 71 strain 1235 polyprotein gene, complete cds | 2376 | __.g.............._ | 2391 | 78 |
| EU131776.1 | Human enterovirus 71 strain N3340-TW-02, complete genome | 2376 | __.g.............._ | 2391 | 78 |
| FJ194964.1 | Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome | 2376 | __.g.............._ | 2391 | 78 |
| FJ360544.1 | Human enterovirus 71 isolate GZ-08-01, complete genome | 2375 | __.g.............._ | 2390 | 78 |
| FJ606447.1 | Human enterovirus 71 strain BJ08-Z004-3, complete genome | 2376 | __.g.............._ | 2391 | 78 |
| GQ994991.1 | Human enterovirus 71 strain Chongqing3-09-China, complete genome | 2376 | __.g.............._ | 2391 | 78 |
| GQ994992.1 | Human enterovirus 71 strain Henan2-09-China, complete genome | 2368 | __.g.............._ | 2383 | 78 |
| HM053670.1 | Human enterovirus 71 strain BJ393, complete genome | 2376 | __.g.............._ | 2391 | 78 |
| AB550338.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat | 2375 | __.g.............._ | 2390 | 78 |
| AB550339.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 75-Yamagat | 2375 | __.g.............._ | 2390 | 78 |
| HQ423142.1 | Human enterovirus 71 strain KMM/09, complete genome | 2376 | __.g.............._ | 2391 | 78 |
| HQ423143.1 | Human enterovirus 71 strain KM186/09, complete genome | 2376 | __.g.............._ | 2391 | 78 |
| HQ456305.1 | Human enterovirus A strain GZ2010-156, complete genome | 2376 | __.g.............._ | 2391 | 78 |
| HQ456313.1 | Human enterovirus A strain GZ2010-95, complete genome | 2376 | __.g.............._ | 2391 | 78 |
| AB575938.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 100 | 2349 | .a.a.....t......... | 2367 | 84 |
| U22521.1 | ETU22521 Human enterovirus 71 polyprotein gene, complete cds | 2377 | __.g..t............ | 2393 | 78 |
| AY421767.1 | Human coxsackievirus A10 strain Kowalik, complete genome | 2374 | _...........ct...._ | 2390 | 78 |
| AB204852.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-TR | 2377 | __.g..t............ | 2393 | 78 |
| AB204853.1 | Human enterovirus 71 genomic RNA, complete genome, sub_strain:BrCr-ts | 2377 | __.g..t............ | 2393 | 78 |
| FJ360545.1 | Human enterovirus 71 isolate GZ-08-02, complete genome | 2376 | __.g.....t......... | 2392 | 78 |
| GQ994990.1 | Human enterovirus 71 strain Chongqing2-09-China, complete genome | 2376 | __.g..t............ | 2392 | 78 |
| GU434678.1 | Human enterovirus 71 strain EV71-Hubei-09-China, complete genome | 2377 | __.g..t............ | 2393 | 78 |
| HQ456308.1 | Human enterovirus A strain GZ2010-118, complete genome | 2376 | __.g..t............ | 2392 | 78 |
| AY302547.1 | Human echovirus 21 strain Farina complete genome | 1598 | __...........t...__ | 1612 | 73 |
| AY843297.1 | Human enterovirus 79 strain USA/CA79-10384, complete genome | 1605 | __...........t...__ | 1619 | 73 |
| AF119795.2 | Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds | 5163 | ....ct.........c.._ | 5146 | 78 |
| AY421761.1 | Human coxsackievirus A3 strain Olson, complete genome | 5150 | ....ct.........c.._ | 5133 | 78 |
| AY421761.1 | Human coxsackievirus A3 strain Olson, complete genome | 1581 | __...........t.____ | 1593 | 63 |
| AY421761.1 | Human coxsackievirus A3 strain Olson, complete genome | 817 | ___..........._____ | 827 | 57 |
| AY421764.1 | Human coxsackievirus A6 strain Gdula, complete genome | 5189 | ....ct.........c.._ | 5172 | 78 |
| FJ172159.1 | Human enterovirus 71 isolate NUH0075/SIN/08, complete genome | 5125 | ....ct.........c.._ | 5108 | 78 |
| AB575941.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 248 | 5103 | ....ct.........c.._ | 5086 | 78 |
| AB575942.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 369 | 5098 | ....ct.........c.._ | 5081 | 78 |
| AB575948.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101 | 5121 | ....ct.........c.._ | 5104 | 78 |
| AF302996.1 | Enterovirus 71 strain SHZH98 polyprotein gene, complete cds | 2377 | __.g..t..........._ | 2392 | 73 |
| AF302996.1 | Enterovirus 71 strain SHZH98 polyprotein gene, complete cds | 2397 | __.........tag..... | 2381 | 73 |
| AF326764.2 | Simian enterovirus 46 strain OM22 (P15), complete genome | 2380 | ___.........c....g. | 2395 | 73 |
| GQ279369.1 | Human enterovirus 71 strain SZ/HK08-5, complete genome | 2376 | __.g..t..........._ | 2391 | 73 |
| GQ279369.1 | Human enterovirus 71 strain SZ/HK08-5, complete genome | 2398 | .c.........tag..... | 2380 | 78 |
| HQ188292.1 | Human enterovirus 71 strain Fuyang-0805a, complete genome | 2379 | __.g..t..........._ | 2394 | 73 |
| HQ188292.1 | Human enterovirus 71 strain Fuyang-0805a, complete genome | 2399 | __.........tag..... | 2383 | 73 |
| AF328683.1 | Human coxsackievirus B4 polyprotein-like gene, complete sequence | 5126 | _....g.........____ | 5113 | 68 |
| AB575923.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 202 | 6116 | _____...........c.. | 6129 | 68 |
| AB575923.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 202 | 2345 | .c.........tgg..... | 2327 | 78 |
| DQ341355.1 | Human enterovirus 71 isolate 06-KOR-00, complete genome | 2400 | .c.........tgg..... | 2382 | 78 |
| DQ341356.1 | Human enterovirus 71 isolate 03-KOR-00, complete genome | 2400 | .c.........tgg..... | 2382 | 78 |
| DQ341358.1 | Human enterovirus 71 isolate S40221-SAR-00, complete genome | 2376 | .a.g..t..t......... | 2394 | 78 |
| DQ341359.1 | Human enterovirus 71 isolate S10862-SAR-98, complete genome | 2376 | .a.g..t..t......... | 2394 | 78 |
| DQ341361.1 | Human enterovirus 71 isolate 1M-AUS-12-00, complete genome | 2376 | .a.a..t..t......... | 2394 | 78 |
| DQ381846.1 | Human enterovirus 71 strain 6F/AUS/6/99, complete genome | 2400 | .c.........tgg..... | 2382 | 78 |
| EF063152.1 | Human enterovirus 71 strain E2005125-TW polyprotein gene, complete cd | 2400 | .c.........tgg..... | 2382 | 78 |
| EU414334.1 | Human enterovirus 71 strain PLday4-CH-06, complete genome | 2375 | .a.a..t..t......... | 2393 | 78 |
| EU414335.1 | Human enterovirus 71 strain PLday1-CH-06, complete genome | 2375 | .a.a..t..t......... | 2393 | 78 |
| AB550340.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-org | 2376 | .a.g..t..t......... | 2394 | 78 |
| AB550341.1 | Human enterovirus 71 genomic RNA, complete genome, strain: KED005-LPS | 2376 | .a.g..t..t......... | 2394 | 78 |
| AB575935.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 480 | 2320 | .a.g..t..t......... | 2338 | 78 |
| AB575936.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 961 | 2315 | .a.g..t..t......... | 2333 | 78 |
| AB575937.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 141 | 2288 | .a.a..t..t......... | 2306 | 78 |
| AB575939.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 365 | 2331 | .c.........tgg..... | 2313 | 78 |
| DQ341357.1 | Human enterovirus 71 isolate 7F-AUS-6-99, complete genome | 2398 | __.........tgg..... | 2382 | 73 |
| DQ452074.1 | Human enterovirus 71 strain 804/NO/03, complete genome | 2379 | __.a..t..t......... | 2395 | 73 |
| AM396584.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 2397 | __.........tgg..... | 2381 | 73 |
| AM396585.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate ENT/P | 2397 | __.........tgg..... | 2381 | 73 |
| AB550332.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-org | 2398 | __.........tgg..... | 2382 | 73 |
| AB550333.1 | Human enterovirus 71 genomic RNA, complete genome, strain: 1095-LPS1 | 2398 | __.........tgg..... | 2382 | 73 |
| AY302542.1 | Human echovirus 16 strain Harrington complete genome | 1602 | __..........ac...__ | 1616 | 68 |
| AY302543.1 | Human echovirus 17 strain CHHE-29 complete genome | 1594 | __..........gt...__ | 1608 | 68 |
| AY302553.1 | Human echovirus 3 strain Morrisey complete genome | 1600 | __..........cc...__ | 1614 | 68 |
| AY843298.1 | Human enterovirus 80 strain USA/CA67-10387, complete genome | 1603 | __..........ct...__ | 1617 | 68 |
| AB426610.1 | Human enterovirus 79 genomic RNA, complete genome, strain: NH95-0601 | 1601 | __..........ct...__ | 1615 | 68 |
| AY302541.1 | Human echovirus 15 strain CH 96-51 complete genome | 5167 | __...g.........____ | 5155 | 63 |
| AY302544.1 | Human echovirus 19 strain Burke complete genome | 5163 | __...g.........____ | 5151 | 63 |
| AY302549.1 | Human echovirus 25 strain JV-4 complete genome | 4820 | __.........a...____ | 4808 | 63 |
| AJ577590.1 | Human echovirus 11, isolate FIN-0666, complete virion genome | 5162 | __..g..........____ | 5150 | 63 |
| DQ534205.1 | Human echovirus 30 isolate 14916net87, complete genome | 5159 | __...g.........____ | 5147 | 63 |
| AY421762.1 | Human coxsackievirus A4 strain High Point, complete genome | 6199 | ______..........c.. | 6211 | 63 |
| AY421762.1 | Human coxsackievirus A4 strain High Point, complete genome | 5486 | _____...........___ | 5496 | 57 |
| DQ341354.1 | Human enterovirus 71 isolate 3799-SIN-98, complete genome | 6175 | ______..........c.. | 6187 | 63 |
| DQ341367.1 | Human enterovirus 71 isolate MY821-3-SAR-97, complete genome | 6174 | ______..........c.. | 6186 | 63 |
| DQ341368.1 | Human enterovirus 71 isolate MY104-9-SAR-97, complete genome | 6174 | ______..........c.. | 6186 | 63 |
| AM396586.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/ | 6174 | ______..........c.. | 6186 | 63 |
| AM396588.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate EV71/ | 6165 | ______..........c.. | 6177 | 63 |
| EU364841.1 | Human enterovirus 71 strain 26M/AUS/4/99, complete genome | 6175 | ______..........c.. | 6187 | 63 |
| EU376004.1 | Human enterovirus 71 26M/AUS/4/99 CHO cell-adapted, complete genome | 6175 | ______..........c.. | 6187 | 63 |
| EU376005.1 | Human enterovirus 71 26M/AUS/4/99 mouse-adapted, complete genome | 6175 | ______..........c.. | 6187 | 63 |
| AB469182.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: SK-E | 6173 | ______..........c.. | 6185 | 63 |
| AB469183.1 | Human enterovirus 71 gene for polyprotein, complete cds, strain: EV71 | 6908 | ______..........c.. | 6920 | 63 |
| AB550334.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-o | 6173 | ______..........c.. | 6185 | 63 |
| AB550335.1 | Human enterovirus 71 genomic RNA, complete genome, strain: SK-EV006-L | 6173 | ______..........c.. | 6185 | 63 |
| AB575913.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 119 | 6100 | ______..........c.. | 6112 | 63 |
| AB575913.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 119 | 5387 | _____...........___ | 5397 | 57 |
| AB575914.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 170 | 6109 | ______..........c.. | 6121 | 63 |
| AB575914.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 170 | 5396 | _____...........___ | 5406 | 57 |
| AY421769.1 | Human coxsackievirus A14 strain G-14, complete genome | 5467 | _____...........___ | 5477 | 57 |
| AB482183.1 | Human enterovirus 71 genomic RNA, complete genome, strain: Nagoya | 5462 | _____...........___ | 5472 | 57 |